PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.4KG359300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 26239.6 Da    PI: 5.07
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.4KG359300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.51.5e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien   rqvtfskRr+g+lKKA+EL vLCda+v v++fs++gkl+ey+s
  Pavir.4KG359300.1.p  9 KRIENRVSRQVTFSKRRKGLLKKAHELAVLCDADVGVVVFSERGKLFEYAS 59
                         79***********************************************86 PP

2K-box57.36.6e-2084160984
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                           ++ +++++ +e++ L++e+e+Lq+      GedL+sL s+ eL +LeqqLe++l+k+R++K+ell++ +eelq k 
  Pavir.4KG359300.1.p  84 HCTDHQQQMIEEISTLRREYEQLQSRVMACPGEDLSSLtSVDELDELEQQLESALTKVRARKDELLTSLTEELQLKI 160
                          5778899*******************************5689********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.525161IPR002100Transcription factor, MADS-box
SMARTSM004323.2E-39160IPR002100Transcription factor, MADS-box
CDDcd002657.99E-39272No hitNo description
SuperFamilySSF554553.66E-30284IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-29323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004044.9E-293859IPR002100Transcription factor, MADS-box
PfamPF014869.1E-1786159IPR002487Transcription factor, K-box
PROSITE profilePS5129712.13789179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGRVEMKR IENRVSRQVT FSKRRKGLLK KAHELAVLCD ADVGVVVFSE RGKLFEYASP  60
PASLTDLIRR YEAVTNTQLL QDTHCTDHQQ QMIEEISTLR REYEQLQSRV MACPGEDLSS  120
LTSVDELDEL EQQLESALTK VRARKDELLT SLTEELQLKI NGYGRHGAAA VGVETAEEIA  180
EPLPPSPSFA YLLNVKEKSA ASTMLRLWPQ ADDDDGDVGG GGGGGSSSPP RRGLQLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-17181186Myocyte-specific enhancer factor 2B
1tqe_Q3e-17181186Myocyte-specific enhancer factor 2B
1tqe_R3e-17181186Myocyte-specific enhancer factor 2B
1tqe_S3e-17181186Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFN5524821e-35FN552482.1 Pennisetum glaucum AFLP fragment RQVTKKA2-4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008648983.17e-94PREDICTED: MADS-box transcription factor 30-like isoform X5
SwissprotQ655V48e-55MAD30_ORYSJ; MADS-box transcription factor 30
TrEMBLK3XZ291e-98K3XZ29_SETIT; Uncharacterized protein
STRINGSi007187m3e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP185037100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.12e-33AGAMOUS-like 6